Application of gene expression profiling in molecular classification of multiplemyeloma
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摘要: 多发性骨髓瘤(multiple myeloma,MM)是一种具有高度异质性的恶性浆细胞疾病。在过去的几年里,随着新药的出现患者的生存已得到极大的改善,但在分子分型及预后评估方面仍面临挑战。以基因表达谱(gene expression profiling,GEP)技术为基础的转录组学研究在很大程度上有助于破译MM的复杂性,为MM的分子分型提供新的视角。基因表达谱芯片可以检测编码和非编码基因的表达、突变和新的转录组修饰,提供更多不同骨髓瘤亚群治疗和预后的新信息。目前,已在多项临床试验中发现基因表达谱可以作为独立的预后因素评估不同队列患者的预后。尽管目前临床上尚未将基因表达谱整合到骨髓瘤的诊断和治疗中,但多个研究中心已开展针对骨髓瘤的表达谱数据研究。通过对公共数据库表达谱数据进行聚类分析,建立临床预后模型,在疾病的动态演变中识别高风险和低风险患者,预测治疗敏感性,找寻新的治疗靶点,使得从转录组水平上制定个体化治疗成为可能。本文就基因表达谱技术在骨髓瘤分子分型中的应用展开综述。Abstract: Multiple myeloma (MM) is a highly heterogeneous malignant plasma cell disease. Although the survival of patients has been significantly improved with the advent of new drugs in the past few years, molecular classification and prognostic evaluation are still challenging. Transcriptome studies based on gene expression profiling help decipher the complexity of MM, providing a new perspective for the molecular classification of MM. Gene expression profiling can assess the expression of coding and noncoding genes, mutations, and novel transcriptome modifiers, providing additional information about the treatment and prognosis of different MM subgroups. Gene expression profiling has been confirmed as an independent prognostic factor in multiple clinical trials to evaluate the prognosis of patients in different cohorts. Although gene expression profiling has not yet been clinically integrated into diagnosis and treatment, expression profiling data for myeloma have been studied at several research centers. Through cluster analysis of expression profiling data in public databases, clinical prognostic models are established to identify high-risk and low-risk patients in the dynamic evolution of the disease, predict treatment sensitivity, and find new therapeutic targets, making it possible to develop individualized treatment at the transcriptome level. This article reviews the application of gene expression profiling in the molecular classification of myeloma.
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Key words:
- multiple myeloma (MM) /
- gene expression profiling /
- microarray /
- transcriptome
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表 1 多发性骨髓瘤TC五组分型
分组 原发易位 基因断裂点 cyclin D 染色体倍性 初诊发生率(%) TC1 11q13 CCND1 D1 非超二倍体 15 6p21 CCND3 D3 非超二倍体 3 TC2 无 无 D2 超二倍体 37 TC3 无 无 D2 超二倍体=非超二倍体 22 TC4 4p16 FGFR3/MMSET D2 非超二倍体>超二倍体 16 TC5 16q23 c-maf D2 非超二倍体 5 20q11 mafB D2 非超二倍体 2 表 2 多发性骨髓瘤的TC8组分型
分组 原发易位 基因断裂点 cyclin D 未治患者发生率(%) 复发患者发生率(%) 6p21 6p21 CCND3 D3 3 3 11q13 11q13 CCND1 D1 16 17 D1 无 无 D1 34 10 D1+D2 无 无 D1+D2 6 17 D2 无 无 D2 17 20 无 无 无 无 2 3 4p16 4p16 FGFR3/MMSET D2 15 23 maf 16q23,20q11 MAF,MAFB D2 7 7 -
[1] Rajkumar SV. Multiple myeloma: 2020 update on diagnosis, risk-stratification and management[J]. Am J Hematol, 2020, 95(5):548–567. [2] Walker BA, Mavrommatis K, Wardell CP, et al. A high-risk, double-hit, group of newly diagnosed myeloma identified by genomic analysis[J]. Leukemia, 2019, 33(1):159–170. [3] Dimopoulos MA, Moreau P, Terpos E, et al. Multiple myeloma: EHA-ESMO clinical practice guidelines for diagnosis, treatment and follow-up[J]. HemaSphere, 2021, 5(2):e528. [4] Höllein A, Twardziok SO, Walter W, et al. The combination of WGS and RNA-Seq is superior to conventional diagnostic tests in multiple myeloma: Ready for prime time[J]? Cancer Genet, 2020, 242:15–24. [5] Szalat R, Avet-Loiseau H, Munshi NC. Gene expression profiles in myeloma: Ready for the real world[J]? Clin Cancer Res, 2016, 22(22):5434–5442. [6] DeRisi J, Penland L, Brown PO, et al. Use of a cDNA microarray to analyze gene expression patterns in human cancer[J]. Nat Genet, 1996, 14:457–460. [7] Furukawa Y, Kikuchi J. Molecular basis of clonal evolution in multiple myeloma[J]. Int J Hematol, 2020, 111(4):496–511. [8] Hideshima T, Bergsagel PL, Kuehl WM, et al. Advances in biology of multiple myeloma: clinical applications[J]. Blood, 2004, 104(3):607–618. [9] Bergsagel PL, Kuehl WM. Critical roles for immunoglobulin translocations and cyclin D dysregulation in multiple myeloma[J]. Immunol Rev, 2003, 194:96–104. [10] Bergsagel PL, Kuehl WM, Zhan F, et al. Cyclin D dysregulation: an early and unifying pathogenic event in multiple myeloma[J]. Blood, 2005, 106(1):296–303. [11] Lovec H, Grzeschiczek A, Kowalski MB, et al. Cyclin D1/bcl-1 cooperates with myc genes in the generation of B-cell lymphoma in transgenic mice[J]. EMBO J, 1994, 13(15):3487–3495. [12] Pawlonka J, Rak B, Ambroziak U. The regulation of cyclin D promoters-review[J]. Cancer Treat Res Commun, 2021, 27:100338. [13] Zhan F, Huang Y, Colla S, et al. The molecular classification of multiple myeloma[J]. Blood, 2006, 108(6):2020–2028. [14] Li C, Wendlandt EB, Darbro B, et al. Genetic analysis of multiple myeloma identifies cytogenetic alterations implicated in disease complexity and progression[J]. Cancers (Basel), 2021, 13(3):1–15. [15] Amare GG, Meharie BG, Belayneh YM. A drug repositioning success: the repositioned therapeutic applications and mechanismsof action of thalidomide[J]. J Oncol Pharm Pract, 2021, 27(3):673–678. [16] Chesi M, Bergsagel PL. Many multiple myelomas: making more of the molecular mayhem[J]. Hematology Am Soc Hematol Educ Program, 2011, 2011:344–353. [17] Shaughnessy JD, Zhan F, Burington BE, et al. A validated gene expression model of high-risk multiple myeloma is defined by deregulated expression of genes mapping to chromosome 1[J]. Blood, 2007, 109(6):2276–2284. [18] Hanamura I. Gain/amplification of chromosome arm 1q21 in multiple myeloma[J]. Cancers (Basel), 2021, 13(2):1–16. [19] Mohan M, Weinhold N, Schinke C, et al. Daratumumab in high-risk relapsed/refractory multiple myeloma patients: adverse effect of chromosome 1q21 gain/amplification and GEP70 status on outcome[J]. Br J Haematol, 2020, 189(1):67–71. [20] Mohan M, Kumar M, Samant R, et al. Bone remineralization of lytic lesions in multiple myeloma – the arkansas experience[J]. Bone, 2021, 146(1):115876. [21] Shaughnessy JD, Qu P, Usmani S, et al. Pharmacogenomics of bortezomib test-dosing identifies hyperexpression of proteasome genes, especially PSMD4, as novel high-risk feature in myeloma treated with total therapy 3[J]. Blood, 2011, 118(13):3512–3524. [22] Ma AG, Yu LM, Zhao H, et al. PSMD4 regulates the malignancy of esophageal cancer cells by suppressing endoplasmic reticulum stress[J]. Kaohsiung J Med Sci, 2019, 35(10):591–597. [23] Decaux O, Lodé L, Magrangeas F, et al. Prediction of survival in multiple myeloma based on gene expression profiles reveals cell cycle and chromosomal instability signatures in high-risk patients and hyperdiploid signatures in low-risk patients: a study of the intergroupe francophone du myélom[J]. J Clin Oncol, 2008, 26(29):4798–4805. [24] Wang H, Gong Y, Liang L, et al. Lycorine targets multiple myeloma stem cell-like cells by inhibition of Wnt/β-catenin pathway[J]. Br J Haematol, 2020, 189(6):1151–1164. [25] Bai H, Chen B. A 5-gene stemness score for rapid determinationof risk in multiple myeloma[J]. Onco Targets Ther, 2020, 13:4339–4348. [26] Kuiper R, Broyl A, De Knegt Y, et al. A gene expression signature for high-risk multiple myeloma[J]. Leukemia, 2012, 26(11):2406–2413. [27] Manasanch EE, Berrios D, Fountain E, et al. Gene expression profiling predicts relapse-free and overall survival in newly diagnosed myeloma patients treated with novel therapies[J]. Br J Haematol, 2021, 192(4):e115–e120. [28] Kumar SK, Callander NS, Hillengass J, et al. Multiple myeloma, version 1.2020 featured updates to the NCCN guidelines[J]. J NCCN J Natl Compr Cancer Netw, 2019, 17(10):1154–1165. [29] Bhutani M, Zhang Q, Friend R, et al. Investigation of a gene signature to predict response to immunomodulatory derivatives for patients with multiple myeloma: an exploratory, retrospective study using microarray datasets from prospective clinical trials[J]. Lancet Haematol, 2017, 4(9):e443–e451. [30] Samo AA, Li J, Zhou M, et al. MCL1 gene co-expression module stratifies multiple myeloma and predicts response to proteasome inhibitor-based therapy Ayaz[J]. Genes Chromosom Cancer, 2018, 57(8):420–429. [31] Wong KY, Chim CS. Venetoclax, bortezomib and S63845, an MCL1 inhibitor, in multiple myeloma[J]. J Pharm Pharmacol, 2020, 72:728–737.
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