于津浦, Tine Casneuf, 刘芃芃, Hans Winkler, 任秀宝, 郝希山. 利用基因表达谱筛选肝细胞癌中炎性微环境形成相关新基因的研究[J]. 中国肿瘤临床, 2011, 38(21): 1304-1309. DOI: 10.3969/j.issn.1000-8179.2011.21.002
引用本文: 于津浦, Tine Casneuf, 刘芃芃, Hans Winkler, 任秀宝, 郝希山. 利用基因表达谱筛选肝细胞癌中炎性微环境形成相关新基因的研究[J]. 中国肿瘤临床, 2011, 38(21): 1304-1309. DOI: 10.3969/j.issn.1000-8179.2011.21.002
Jinpu YU, Tine Casneuf, Pengpeng LIU, Hans Winkler, Xiubao Ren, Xishan HAO. Screening of New Candidate Genes Correlated with Inflammatory Microenvironment Genesis in Primary Hepatocellular Carcinoma Using Gene Expression Profiling[J]. CHINESE JOURNAL OF CLINICAL ONCOLOGY, 2011, 38(21): 1304-1309. DOI: 10.3969/j.issn.1000-8179.2011.21.002
Citation: Jinpu YU, Tine Casneuf, Pengpeng LIU, Hans Winkler, Xiubao Ren, Xishan HAO. Screening of New Candidate Genes Correlated with Inflammatory Microenvironment Genesis in Primary Hepatocellular Carcinoma Using Gene Expression Profiling[J]. CHINESE JOURNAL OF CLINICAL ONCOLOGY, 2011, 38(21): 1304-1309. DOI: 10.3969/j.issn.1000-8179.2011.21.002

利用基因表达谱筛选肝细胞癌中炎性微环境形成相关新基因的研究

Screening of New Candidate Genes Correlated with Inflammatory Microenvironment Genesis in Primary Hepatocellular Carcinoma Using Gene Expression Profiling

  • 摘要: 利用基因表达谱芯片筛选肝细胞癌(HCC)中的差异表达基因,并分析神经降压素(NTS)表达与HCC中炎性微环境形成的相互关系。方法:收集10例原发性HCC癌与癌旁组织,提取RNA进行Affymetrix全基因组表达谱芯片检测,同时整合GEO数据库中同芯片平台的亚洲人原发性HCC的mRNA表达谱数据30例,利用R2.9.0软件获得差异基因列表,应用MetaCore   2.5,Pathway Studio 6.0和Ingenuity 1.0软件进行信号通路分析。最后,结合HE染色比较不同NTS表达水平的HCC标本中炎症反应强度。结果:所有RNA样品无降解,各芯片数据的信号强度分布均一。SMA聚类和信号通路分析结果显示40例HCC标本中存在一组独特亚群,呈现神经降压素(NTS)高表达,并伴有胞外间质重构、细胞粘附、白细胞移动、血管新生等生物学过程显著增强。HE染色证实NTS高表达标本中炎细胞浸润、纤维增生和血管生成明显高于NTS低表达的标本。结论:NTS高表达可能促进HCC中炎性环境的形成。

     

    Abstract: To screen differentially expressed genes in hepatocellular carcinoma (HCC) and evaluate the correlation between neurotensin (NTS) expression and inflammatory microenvironment genesis. Methods: Ten cases of primary HCC samples and corresponding adjacent tissues were collected, and total RNA was extracted for gene expression profiling using Affymetrix GeneChip® Human Genome U133 Plus 2.0. Thirty more cases of gene expression profiling data were downloaded from the GEO database and integrated with previous data to screen the differentially expressed genes using R2.9.0. The pathway analysis was conducted using MetaCore 2.5, Pathway Studio 6.0, and Ingenuity  1.0. Finally, the intensity of inflammation in situ was compared among 10 cases of HCC samples with different NTS expressions by H & E staining. Results: The RNA samples and bioinformatics data were of good quality. A distinct subgroup with high NTS expression, increased extracellular matrix reorganization, cell adhesion, leukocyte migration, and angiogenesis regulation was isolated from all 40 cases of HCC samples using SMA cluster and pathway analyses. More infiltrated inflammatory leukocytes and increased fibrogenesis and angiogenesis were observed in HCC samples with high NTS expression. Conclusion: Upregulated NTS expression may promote inflammatory microenvironment genesis in HCC.

     

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