基于糖代谢相关基因的肾透明细胞癌预后模型的构建与评价

Construction and evaluation of a prognostic model for clear cell renal cell carcinoma based on carbohydrate metabolism-related genes

  • 摘要:
    目的 构建肾透明细胞癌(clear cell renal cell carcinoma,ccRCC)的糖代谢相关基因(carbohydrate metabolism-related genes,CRGs)预后模型并探索其临床意义。
    方法 选取TCGA数据库中ccRCC的mRNA表达数据,从MSigDB和KEGG数据库获取CRGs。通过LASSO回归建立CRGs预后模型并计算风险评分(RS)。按照RS中位数将患者分为高、低风险组,利用Kaplan-Meier曲线和生物信息学方法分析两组间的生存、免疫浸润、突变和免疫应答之间的差异。依据RS与临床特征构建诺模图,验证其预后预测效能。利用RT-qPCR检测ccRCC样本中CRGs表达量。
    结果 8个CRGs用于构建ccRCC预后风险模型,生存分析显示低风险组的患者预后较好(P<0.001)。生物信息学分析表明RS与免疫浸润、突变和免疫应答相关。根据RS与临床特征构建的诺模图具有良好的预后预测性能。体外实验证实上述8个CRGs在ccRCC组织和癌旁组织之间的表达存在显著的差异。
    结论 基于CRGs的预后模型可以用于ccRCC患者的预后预测。

     

    Abstract:
    Objective  To establish a carbohydrate metabolism-related genes (CRGs) prognostic model for clear cell renal cell carcinoma (ccRCC) and investigate its clinical value.
    Methods ccRCC mRNA expression data were sourced from The Cancer Genome Atlas (TCGA) database. CRGs were retrieved from the MSigDB and KEGG databases. A prognostic model based on CRGs was constructed using the LASSO linear regression model, and the risk score (RS) was calculated. Patients were assigned into high- and low-risk groups according to the median RS. Differences in survival, immune infiltration, mutation, and immune response between the two groups were analyzed using Kaplan-Meier curves and bioinformatics methods. Constructing a nomogram based on the RS and clinical features and validating its accuracy of prognostic predictions. The expression of CRGs in the ccRCC samples was detected using RT-qPCR.
    Results A total of eight key genes were utilized to construct a prognostic risk model for ccRCC. Survival analysis revealed that patients in the low-risk group had a better prognosis (P<0.001). Bioinformatics analysis showed that the RS correlated with immune cell infiltration, mutation, and immune responses. The nomogram based on the RS and clinical features demonstrated a strong predictive ability for prognosis. In vitro experiments confirmed notable differences in the expression of the eight CRGs between ccRCC and adjacent non-malignant tissues.
    Conclusions  A prognostic model based on CRGs can effectively predict the prognosis of patients with ccRCC.

     

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